Publications

Past Work

2018

High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification
X. Jia, J. Siegle, C. Bennett, S. Gale, D. Denman, C. Koch, and S. Olsen
bioRxiv, pp. 376863, Jul. 2018
DOI: 10.1101/376863

Visual physiology of the Layer 4 cortical circuit in silico
A. Arkhipov, N.W. Gouwens, Y.N. Billeh, S. Gratiy, R. Iyer, Z. Wei, Z. Xu, J. Berg, M. Buice, N. Cain, N. da Costa, S. de Vries, D. Denman, S. Durand, D. Feng, T. Jarsky, J. Lecoq, B. Lee, L. Li, S. Mihalas, G.K. Ocker, S.R. Olsen, R.C. Reid, G. Soler-Llavina, S.A. Sorensen, Q. Wang, J. Waters, M. Scanziani, and C. Koch
bioRxiv, pp. 292839, Mar. 2018
DOI: 10.1101/292839

The songs of silence: Cortical suppression and synchronization by layer-specific activation
D. Denman
Journal of Physiology, Jan. 2018
DOI: 10.1113/JP275797

Mouse color and wavelength-specific luminance contrast sensitivity are non- uniform across visual space
D.J. Denman, J.A. Luviano, D.R. Ollerenshaw, S. Cross, D. Williams, M.A. Buice, S.R. Olsen, and R.C. Reid
eLife, vol. 7, pp. 1–16, Jan. 2018
DOI: 10.7554/eLife.31209

2017

Mouse hue and wavelength-specific luminance contrast sensitivity are non-uniform across visual space.
D.J. Denman, J.A. Luviano, D.R. Ollerenshaw, S. Cross, D. Williams, M.A. Buice, S.R. Olsen, and R.C. Reid
bioRxiv, pp. 174631, Aug. 2017
DOI: https://doi.org/10.1101/174631

From Maxwell’s equations to the theory of current-source density analysis
S. Gratiy, G. Halnes, D. Denman, M. Hawrylycz, C. Koch, G. Einevoll, and C. Anastassiou
European Journal of Neuroscience, vol. 45, no. 8, Jan. 2017
DOI: 10.1111/ejn.13534

Fully integrated silicon probes for high-density recording of neural activity
J.J. Jun, N.A. Steinmetz, J.H. Siegle, D.J. Denman, M. Bauza, B. Barbarits, A.K. Lee, C.A. Anastassiou, A. Andrei, Ç. Aydın, S.L. Gratiy, D.A. Gutnisky, M. Häusser, B. Karsh, P. Ledochowitsch, C.M. Lopez, C. Mitelut, S. Musa, M. Okun, M. Pachitariu, J. Putzeys, P.D. Rich, C. Rossant, W.L. Sun, K. Svoboda, M. Carandini, K.D. Harris, C. Koch, J. O ‘keefe, and T.D. Harris
Nature, vol. 551, pp. 232–236, Jan. 2017
DOI: 10.1038/nature24636

Spatial Organization of Chromatic Pathways in the Mouse Dorsal Lateral Geniculate Nucleus
D.J. Denman, J.H. Siegle, C. Koch, R.C. Reid, and T.J. Blanche
Journal of Neuroscience, vol. 37, no. 5, pp. 1102–1116, Jan. 2017
DOI: 10.1523/JNEUROSCI.1742-16.2016

2016

On Parallel Streams through the Mouse Dorsal Lateral Geniculate Nucleus
D.J. Denman and D. Contreras
Frontiers in Neural Circuits, vol. 10, pp. 20, Mar. 2016
DOI: 10.3389/fncir.2016.00020

Inferring cortical function in the mouse visual system through large-scale systems neuroscience
M. Hawrylycz, C. Anastassiou, A. Arkhipov, J. Berg, M. Buice, N. Cain, N.W. Gouwens, S. Gratiy, R. Iyer, J. Hoon Lee, S. Mihalas, C. Mitelut, S. Olsen, R. Clay Reid, C. Teeter, S. de Vries, J. Waters, H. Zeng, C. Koch, and E.M. by Richard Shiffrin
Proceedings of the National Academy of Sciences of the United States of America, Jan. 2016
DOI: 10.1073/pnas.1512901113

2015

Optogenetics in mice performing a visual discrimination task: Measurement and suppression of retinal activation and the resulting behavioral artifact
B. Danskin,D. Denman, M. Valley, D. Ollerenshaw, D. Williams, P. Groblewski, C. Reid, S. Olsen, and J. Waters
PLoS ONE, vol. 10, no. 12, Jan. 2015
DOI: 10.1371/journal.pone.0144760

Closed-loop, ultraprecise, automated craniotomies
N. Pak, J.H. Siegle, J.P. Kinney, D.J. Denman, T.J. Blanche, and E.S. Boyden
Journal of Neurophysiology, vol. 113, no. 10, pp. 3943–3953, Jan. 2015
DOI: 10.1152/jn.01055.2014

Complex Effects on In Vivo Visual Responses by Specific Projections from Mouse Cortical Layer 6 to Dorsal Lateral Geniculate Nucleus
D.J. Denman and D. Contreras
Journal of Neuroscience, vol. 35, no. 25, pp. 9265–9280, Jan. 2015
DOI: 10.1523/JNEUROSCI.0027-15.2015

2014

The structure of pairwise correlation in mouse primary visual cortex reveals functional organization in the absence of an orientation map
D.J. Denman and D. Contreras
Cerebral Cortex, Jan. 2014
DOI: 10.1093/cercor/bht128

Conference Publications and Posters

2015

Ultracompact optoflex neural probes for high-resolution electrophysiology and optogenetic stimulation
M. Chamanzar, D. Denman, T. Blanche, and M. Maharbiz
Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS), Jan. 2015
DOI: 10.1109/MEMSYS.2015.7051049